QB Issue Resolution:

Welcome to the QuickBooks Community!

Yes, here’s how you can enter an additional amount for the Federal Income Tax:

  1. On the left panel, click Employees.
  2. Click the employee’s name and click the pencil icon next to Pay.
  3. Click the pencil icon under “What are employee’s withholdings?“.
  4. In the W-4 box, enter the amount under “Additional amount, if any, you want withheld from each paycheck“.

Resolution for Issue 'Can I deduct extra federal income tax from a paycheck?' available: Yes (Solved).
Source: Intuit Community forum.

Can I deduct extra federal income tax from a paycheck?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for deduct extra federal income tax from a paycheck
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Error Recovery for deduct extra federal income tax from a paycheck [Canada]
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