QB Issue Resolution:

Probably, as you created paychecks the new DD check printing option was set to not print (that is the default) as most people don’t want to ‘waste’ checks, and they print pay-stubs instead for DD employees. Next time you create paychecks, change that setting on the first or second slide of the create paychecks process (I forget) so that new DD checks will print as well, and it will then ‘stick’ for future payrolls after that.

Resolution for Issue 'Did Direct Deposit checks change with QB Pro 2015?' available: Yes (Solved).
Source: Intuit Community forum.

Did Direct Deposit checks change with QB Pro 2015?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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