QB Issue Resolution:

No, only one account is allowed when setting up direct deposit. If you use direct deposit for vendors, it must also be from that same account.

Resolution for Issue 'Direct Deposit From 2 checking Accounts.' available: Yes (Solved).
Source: Intuit Community forum.

Direct Deposit From 2 checking Accounts.: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for Direct Deposit
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Error Recovery for Direct Deposit [Canada]
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