QB Issue Resolution:

No, GSt is not collected on a deposit or prepayment. If unsure, check the CRA website for guidance.

Resolution for Issue 'do you charge hst when accepting deposits' available: Yes (Solved).
Source: Intuit Community forum.

do you charge hst when accepting deposits: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for accepting deposits
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Error Recovery for accepting deposits [Canada]
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Additional Support Options: