QB Issue Resolution:

Generally, sales tax is not charged on an initial deposit or pre-payment. SalesĀ  tax is, however, charged on subsequent Draws.

 

Resolution for Issue 'do you charge hst when accepting deposits' available: Yes (Solved).
Source: Intuit Community forum.

do you charge hst when accepting deposits: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for charged on subsequent Draws
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Error Recovery for charged on subsequent Draws [Canada]
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