QB Issue Resolution:

Best practice is test it. Run a draft paycheque. Usually Intuit is on top of this change but you know what? The onus is still on us to test.

Resolution for Issue 'Hello. I am just wondering if the income tax deductions (CPP and EI) are automatically set up for the 2019 year?' available: Yes (Solved).
Source: Intuit Community forum.

Hello. I am just wondering if the income tax deductions (CPP and EI) are automatically set up for the 2019 year?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for CPP
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