QB Issue Resolution:

Hello,

 

If your customer is paying the invoice online through QuickBooks, then you can select which bank account the funds are deposited into, but you can only use 1 account for ALL payments.

 

If you’re recording the payments manually into QuickBooks and then taking the cash/checks to the bank to deposit, then yes you can select ANY bank account to deposit the payment into in QuickBooks.

Resolution for Issue 'Hi, Another day, another question. When sending an invoice, is there a way to set up which account should be used for payment? For example, I have 4 different accounts and when I send an invoice I would like the funds to be deposited into one of these 4 accounts. Is there a way to do that? I will be really grateful' available: Yes (Solved).
Source: Intuit Community forum.

Hi, Another day, another question. When sending an invoice, is there a way to set up which account should be used for payment? For example, I have 4 different accounts and when I send an invoice I would like the funds to be deposited into one of these 4 accounts. Is there a way to do that? I will be really grateful: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for Invoices
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