QB Issue Resolution:

If you have an adjustment account in real life, then you should have one in QB too

Edit the original check changing the amount to the actual amount withdrawn, explain the reason for the edit in the memo line

in the adjustment account enter a transaction for the amount withdrawn, use same expense account that the original check used

Resolution for Issue 'How do I account in QB, when the money withdrawn from our account, and the check amount didn’t match? The adjustment was paid by the bank' available: Yes (Solved).
Source: Intuit Community forum.

How do I account in QB, when the money withdrawn from our account, and the check amount didn’t match? The adjustment was paid by the bank: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for actual amount
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Error Recovery for actual amount [Canada]
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