QB Issue Resolution:
The settings should be in the print dialog that appears after you choose the checks. Its the Apple print dialog – you may have to click “Expand All” to see all the options. There should be a pop up menu for things like Layout and Paper. One of the options in that menu is “QuickBooks”. Choose that. Then you’ll see several options for the checks.
The most important option is the type of check chosen – wallet, portfolio, etc. Once that is selected you can alter the alignment and so on until it matches up.
Resolution for Issue 'How do I adjust the alignment for printing checks? The new ones I received from Intuit do not line up…' available: Yes (Solved).
Source: Intuit Community forum.
How do I adjust the alignment for printing checks? The new ones I received from Intuit do not line up…: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.Support for Checks
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