QB Issue Resolution:

It sounds like the deduction is set up to use the bank account. You can see if this is the case on your payroll items list in the account columns.  I can’t think of a case where that would make sense, and if that is the case probably change it to be a liability account or similar.

Resolution for Issue 'How do I change the payroll checks where they will show the actual check amount in the reconciliation window?' available: Yes (Solved).
Source: Intuit Community forum.

How do I change the payroll checks where they will show the actual check amount in the reconciliation window?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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