QB Issue Resolution:

It matters if the Change Order expand scope or remove scope.

 

Example:

In my image for the sample file, you see:

Customer <== parent level name

Job <== second tier

Change Order <== third tier, which means you are tracking it by itself. Then, the CO is either “billable” time & costs, Estimate based, Fixed Rate addition, etc. It stands alone as something to manage.

 

If you don’t care about that tracking, you can put the items subject to Directly Billable outside Original Scope, on their own invoice for your existing Job Name as it exists already. When you Invoice, you get that pop up to Select from the Estimate. Hit Escape or cancel, to see the blank invoice where you now get to use Add Time & Costs. That doesn’t affect Progress at all. It isn’t even linked to the Estimate.

Resolution for Issue 'How do I create a change order for a job that has an estimate and 2 progress invoices so far?' available: Yes (Solved).
Source: Intuit Community forum.

How do I create a change order for a job that has an estimate and 2 progress invoices so far?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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