QB Issue Resolution:

write a check for the amount, change the check number to eft, select the bad debt expense account, do not print, in the memo block enter nsf the check number and date

do that again if your bank hit you with a service charge

create a new invoice, use the service item you set up for this, enter the amount of the check and the details (check number, amount, date etc) in the description block

use a service item you set up for bounced check charges if you charge a fee

Resolution for Issue 'How do i handle an NSF check?' available: Yes (Solved).
Source: Intuit Community forum.

How do i handle an NSF check?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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