QB Issue Resolution:

You need to record the customer payment and deposit it to undeposited funds. Then group the deposit and drop to the bottom and put the negative charge to merchant fees in there.  Then match the bank feed to the transaction.

Resolution for Issue 'How do I properly enter bank fees for wire transfers?' available: Yes (Solved).
Source: Intuit Community forum.

How do I properly enter bank fees for wire transfers?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for bank fees
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Error Recovery for bank fees [Canada]
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