QB Issue Resolution:

Go to your chart of accounts. Find the reconciliation discrepancy account. Click to expand as a report. And then edit and delete each transaction to that account. Be careful doing this, however, as if any of these are from a closed fiscal period.  You don’t want to disturb that. You May have to make an adjustment to clear it.

Resolution for Issue 'How do I remove reconciliation discrepancies that are showing on my chart of accounts? I un-reconciled all of the bank statements to a prior period and correctly reconciled them in QBO to match the bank statements. But that process did not remove the entries from the chart of account reconcilation discrepancies report. Thank you, Debbie' available: Yes (Solved).
Source: Intuit Community forum.

How do I remove reconciliation discrepancies that are showing on my chart of accounts? I un-reconciled all of the bank statements to a prior period and correctly reconciled them in QBO to match the bank statements. But that process did not remove the entries from the chart of account reconcilation discrepancies report. Thank you, Debbie: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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