QB Issue Resolution:

The only way to that in QB, is to (assuming two tax rates 6% and 7%) create three rates

rate 1 = 0%
rate 2 = 7%
rate 3 = 6%

On the invoice set the customer sales tax rate to rate 1(at the bottom of the item list area)

list all items that have a 7% rate, follow that with a sub-total item, and then rate 2

list all items that have a 6% rate, follow that with a sub-total item, and then rate 3

Resolution for Issue 'How to manage discrectionary sales tax over $5000.' available: Yes (Solved).
Source: Intuit Community forum.

How to manage discrectionary sales tax over $5000.: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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