QB Issue Resolution:

If you Add or Match a Transaction using the Online Banking feature, this will automatically set them to Cleared. You can also manually set them through going to the Chart of Accounts, then Account History for that Bank Account, and in the chart set the status to ‘C’. When Reconciling using the Bank Reconciliation feature, this will automatically change the status to ‘R’.

Resolution for Issue 'How to mark “cleared” on cheques?' available: Yes (Solved).
Source: Intuit Community forum.

How to mark “cleared” on cheques?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for cheques
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Error Recovery for cheques [Canada]
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