QB Issue Resolution:

The amount that gets reported on the 1099 is determined by the expense account you use and map to the 1099 when you pay him.  Paying him using an expense account that is not mapped to the 1099 will not show up for 1099 reporting

you use desktop, create his name as an “Other name”, you can use that name on checks without problems

Resolution for Issue 'How to pay vendor for reimbursable expenses' available: Yes (Solved).
Source: Intuit Community forum.

How to pay vendor for reimbursable expenses: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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