QB Issue Resolution:

No you don’t need to mess up your reconciliation.  Just Make a Deposit in the current month to put this back into the bank account and code the deposit to a GL current liability account names “Returned Checks”.  Put any pertinent info you need in the Memo field.

Then re-issue the check and post it to this same account to clear it.  On your bank recon, clear the deposit you just made against the older check which is outstanding because it didn’t clear.  This will leave the new check you issued outstanding and you clear it when it goes through.

Resolution for Issue 'how to record this transaction without void payment? online bill pay refund back to the bank account after month close and keep the month end balance matched.' available: Yes (Solved).
Source: Intuit Community forum.

how to record this transaction without void payment? online bill pay refund back to the bank account after month close and keep the month end balance matched.: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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