QB Issue Resolution:

When you go to the teller and move funds from old bank to remaining bank, the Bookkeeping in QB will be from old bank to new subaccount of existing bank.

Resolution for Issue 'How to track funds after combining 2 checking accounts via transfer' available: Yes (Solved).
Source: Intuit Community forum.

How to track funds after combining 2 checking accounts via transfer: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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