QB Issue Resolution:

I process as though I were paying by check to bring up the payment screen and where it shows the check number, I just enter e-pay for the check number and make the date as the same day I did the EFTPS payment. We use the quickbooks enhanced payroll to run our payroll and so I open payroll, then highlight the tax I paid and click on pay liabilities. When the screen pops up, enter the e-pay and correct date of payment, then close and save. That should then remove the tax from the list of taxes due.

Resolution for Issue 'I am calling in my payroll taxes on a monthly basis through EFTPS & then filing a paper return quarterly. How do I clear my quarterly tax liability in quickbooks?' available: Yes (Solved).
Source: Intuit Community forum.

I am calling in my payroll taxes on a monthly basis through EFTPS & then filing a paper return quarterly. How do I clear my quarterly tax liability in quickbooks?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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