QB Issue Resolution:

I do agree that it’s really important we’re able to reconcile square transactions in QuickBooks Online. Here’s a link Square & QuickBooks which contains information regarding the Square and QuickBooks integration. You’ll find articles related to the importing Square transactions. For you convenience, here’s a link https://squareup.com/help/en-us/contact to contact customer support if you have any further questions regarding Square fees.

Resolution for Issue 'I am trying to reconcile some old square transactions, the square deposit is less than my payment recieved, where do i enter the square expense/charge??' available: Yes (Solved).
Source: Intuit Community forum.

I am trying to reconcile some old square transactions, the square deposit is less than my payment recieved, where do i enter the square expense/charge??: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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