QB Issue Resolution:

Enter a receive payment for each check and select any portions of that customer’s invoices that add up to that particular check. You are not restricted to posting a payment only for a full amount.

Post the checks to Undeposited Funds, then create a Deposit that includes these and equals your trip to the bank

Resolution for Issue 'I am using Quickbooks Online, usually the Windows Desktop client. I have a customer with multiple current projects. I have issued a final invoice for each project. The customer has elected to pay their total balance with multiple checks in order to utilize multiple checking accounts, and the check amounts do not match the individual invoice amounts, but they do cover the entire remaining balance on the customer’s account. How do I account for the mismatched payments and keep everything neatly linked to the invoice and the downloaded bank transactions?' available: Yes (Solved).
Source: Intuit Community forum.

I am using Quickbooks Online, usually the Windows Desktop client. I have a customer with multiple current projects. I have issued a final invoice for each project. The customer has elected to pay their total balance with multiple checks in order to utilize multiple checking accounts, and the check amounts do not match the individual invoice amounts, but they do cover the entire remaining balance on the customer’s account. How do I account for the mismatched payments and keep everything neatly linked to the invoice and the downloaded bank transactions?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for Invoice
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