QB Issue Resolution:

Automated pay runs do not lodge for STP as the ATO requires the authority to be “signed” for each pay event, you’ll need to log in to QuickBooks Payroll powered by KeyPay and send the pay event.

 

The following article covers the process: https://quickbooks.intuit.com/community/Payroll-and-STP/Create-and-lodge-a-pay-event/m-p/275361

Resolution for Issue 'I use automated pay-runs, I enabled STP a couple of weeks ago, but it hasn’t been lodged with the ATO, Is there something else I should do?' available: Yes (Solved).
Source: Intuit Community forum.

I use automated pay-runs, I enabled STP a couple of weeks ago, but it hasn’t been lodged with the ATO, Is there something else I should do?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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