QB Issue Resolution:

The location on the invoice applies to the entire transaction. The option to split a single payment between two locations is unavailable.

You’ll want to create different invoices for each location and then apply the payment.

 

To match the payment with the invoices:

  1. Click Banking, and then Banking at the top.
  2. Under For Review tab, locate the payment.
  3. Click the payment and click the Find match radio button.
  4. Set the dates and select the invoices.
  5. Click Save.

You might want to refer to this article for your reference: Add and match downloaded banking transactions.

Resolution for Issue 'If a single payment transaction can be split between two location' available: Yes (Solved).
Source: Intuit Community forum.

If a single payment transaction can be split between two location: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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