QB Issue Resolution:
The only way you’d be able to accomplish this would be to go back and forth to change the preferred method of pay from Direct Deposit to Paper check. I’d recommend one or the other, since there’s not an option to set QuickBooks Online up that way.
Resolution for Issue 'Is it possible to have employees direct deposit 1 check and issue a paper check for their 2nd payroll of the month?' available: Yes (Solved).
Source: Intuit Community forum.
Is it possible to have employees direct deposit 1 check and issue a paper check for their 2nd payroll of the month?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.Support for Direct Deposit
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Error Recovery for Direct Deposit [Canada]
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