QB Issue Resolution:

After alot of trial and error I actually found a solution myself.

 

From the bank feed, instead of matching payments to invoices, I added the transactions as a Cheque with the Payee as the relevant supplier and Creditors as the account to post to.

 

I then went into the suppplier and used the credits on the account to offset against the open invoices which left the correct credit open on the account to use against the next invoice.

Resolution for Issue 'Matching a payment to a supplier without an invoice.' available: Yes (Solved).
Source: Intuit Community forum.

Matching a payment to a supplier without an invoice.: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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