QB Issue Resolution:

I’d use an invoice and put a note on the face of the invoice that payment is due in three parts.

Resolution for Issue 'My customer owes me for service to be paid in three parts, how do I bill for this transaction' available: Yes (Solved).
Source: Intuit Community forum.

My customer owes me for service to be paid in three parts, how do I bill for this transaction: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for billing
Quickbooks Repair Pro will resolve it efficiently and affordably. Guaranteed resolution of your issue, or you pay nothing!

Error Recovery for billing [Canada]
E-Tech is the #1 Quickbooks data migration and Conversion service provider.

Get 50% off Quickbooks Online

Click Here for 50% off!

Additional Support Options: