QB Issue Resolution:

We’ll have to create the final cheque as normal Non Salary, record hours worked, and any other pay types. This should be done if your employee’s vacation is paid out as a percentage of gross pay.

Also, you might want to read this article to learn more how QuickBooks handles vacation pay: Why does box 15C on the Record of Employment not match the payroll details or paycheque list? (Canada only)

Resolution for Issue 'QB online support says that vacation pay when paid out as a percentage of gross each pay is reported by pay date of cheque on a ROE? Service Canada says this is wrong?' available: Yes (Solved).
Source: Intuit Community forum.

QB online support says that vacation pay when paid out as a percentage of gross each pay is reported by pay date of cheque on a ROE? Service Canada says this is wrong?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for Employee
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