QB Issue Resolution:

you do not

1099 reporting is cash based, the date you pay the vendor is what counts

you should have issued a corrected 1099 for 2013 to the vendor, and the IRS, you should check with your tax accountant at this point

Resolution for Issue 'Re-issued check appearing on 1099 List' available: Yes (Solved).
Source: Intuit Community forum.

Re-issued check appearing on 1099 List: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for 1099
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Error Recovery for 1099 [Canada]
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