QB Issue Resolution:

Before you lodge a BAS in Quickbooks all of your GST components go to the BAS Liabilities Payable account. When you mark a BAS as lodged in your QBO file this will then journal the total amount for that lodged period into the BAS Suspense account. This is the account you should be posting the payments to for the ATO.

When you select the ‘Payment’ tab and use the Record PAYG Payment button this will record amounts to that particular line. If you Record Payment from the normal GST screen and select ‘Record Payment’ underneath the actions column this will post the payment to the BAS Suspense for that period.

Resolution for Issue 'Reconciling ATO GST Payments under CoA code #620 BAS Suspense or #610 BAS Liabilities Payable ??' available: Yes (Solved).
Source: Intuit Community forum.

Reconciling ATO GST Payments under CoA code #620 BAS Suspense or #610 BAS Liabilities Payable ??: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for BAS Liabilities
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Error Recovery for BAS Liabilities [Canada]
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