Work flow is typically for you to enter transactions, then online banking just matches them,

plus menu >customers>receive payment

select the customer then check mark the invoices that are being paid

then use make deposits to deposit the funds, and QB banking should match the deposit

Resolution for '1000 and £600 issue: 'How do I match a payment received of £1600 to 2 smaller invoices for £1000 and £600?' available: Yes.

The 1000 and £600 issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the 1000 and £600 issue yourself by looking for a resolution described in the article. If it is a complex 1000 and £600 issue or you are unable to solve the issue, you may contact us by clicking here or by using other 1000 and £600 support options.

For more information about resolving issues related to 1000 and £600 in Quickbooks/QBO or to get support for the issue 'How do I match a payment received of £1600 to 2 smaller invoices for £1000 and £600?', click the link below: