The IRS will send you a notice for the penalty. I recommend you call the IRS so that you can coordinate with them about the penalty.

In case you need the steps to e-file 1099 & 1096, you can refer to this article: https://community.intuit.com/articles/1304683. You can also find the IRS […]

Resolution for '1099 deadline issue: 'I’ve missed the IRS 1096 & 1099 deadline. Plan to electronically today/tomorrow (April 13th or 14th). How/when do I pay the late penalty for late 1096/1099?' available: Yes.

The 1099 deadline issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the 1099 deadline issue yourself by looking for a resolution described in the article. If it is a complex 1099 deadline issue or you are unable to solve the issue, you may contact us by clicking here or by using other 1099 deadline support options.

For more information about resolving issues related to 1099 deadline in Quickbooks/QBO or to get support for the issue 'I’ve missed the IRS 1096 & 1099 deadline. Plan to electronically today/tomorrow (April 13th or 14th). How/when do I pay the late penalty for late 1096/1099?', click the link below: