Yes, both checks have different printing setup. For payroll checks, you need to go to the Preferences tab and choose the paycheck printing settings.

Also, you must use the preprinted voucher-style check stock that is compatible with QuickBooks when printing payroll checks. Next, make sure to

Resolution for 'Alignment window issue: 'My payroll checks are not lined up while my payable checks are lined up correctly. Are there two separate alignment places for printing checks?' available: Yes.

The Alignment window issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the Alignment window issue yourself by looking for a resolution described in the article. If it is a complex Alignment window issue or you are unable to solve the issue, you may contact us by clicking here or by using other Alignment window support options.

For more information about resolving issues related to Alignment window in Quickbooks/QBO or to get support for the issue 'My payroll checks are not lined up while my payable checks are lined up correctly. Are there two separate alignment places for printing checks?', click the link below:

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