Enter them in the bank acct. that the funds went into.  Enter the gross sales and then enter as a minus amount the fees. The net deposit should match what hit your bank.

Resolution for 'amount the fees issue: 'Where to enter BoA merchant account. Under income' available: Yes.

The amount the fees issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the amount the fees issue yourself by looking for a resolution described in the article. If it is a complex amount the fees issue or you are unable to solve the issue, you may contact us by clicking here or by using other amount the fees support options.

For more information about resolving issues related to amount the fees in Quickbooks/QBO or to get support for the issue 'Where to enter BoA merchant account. Under income', click the link below: