The way this is supposed to work, is you make entries in QB, then you download banking and match banking to the QB entries.

So make the payments in QB, then do the matching

Resolution for 'banking to the QB entries issue: 'Over payment to supplier' available: Yes.

The banking to the QB entries issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the banking to the QB entries issue yourself by looking for a resolution described in the article. If it is a complex banking to the QB entries issue or you are unable to solve the issue, you may contact us by clicking here or by using other banking to the QB entries support options.

For more information about resolving issues related to banking to the QB entries in Quickbooks/QBO or to get support for the issue 'Over payment to supplier', click the link below: