“I print out the checks on blank paper”

Why not use the Payroll Summary Report?

“and use that info to input at the bank.  The problem is the bank debits our checking account the total of the checks but in the QB register the checks are listed individually.”

Make one bank account and […]

Resolution for 'banks program issue: 'How to set up direct deposit using bank service?' available: Yes.

The banks program issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the banks program issue yourself by looking for a resolution described in the article. If it is a complex banks program issue or you are unable to solve the issue, you may contact us by clicking here or by using other banks program support options.

For more information about resolving issues related to banks program in Quickbooks/QBO or to get support for the issue 'How to set up direct deposit using bank service?', click the link below: