use make deposits, at the bottom is cash back, select the merchant fee expense account and enter the fee amount, when you click out of that block QB should show the correct deposit amount

Resolution for 'correct deposit amount issue: 'how do I make deposits from undeposited funds for merch settlement' available: Yes.

The correct deposit amount issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the correct deposit amount issue yourself by looking for a resolution described in the article. If it is a complex correct deposit amount issue or you are unable to solve the issue, you may contact us by clicking here or by using other correct deposit amount support options.

For more information about resolving issues related to correct deposit amount in Quickbooks/QBO or to get support for the issue 'how do I make deposits from undeposited funds for merch settlement', click the link below: