I would think you could, but your w3 has to match totals with all of your w2’s.  You would have to do a corrected w3 if you have already sent it.

Resolution for 'corrected w3 issue: 'When I submitted my W-2’s electronically to SSA, 1 employee’s record was not checked. Is it ok for me to do a second submission to SSA with just the one missing W-2?' available: Yes.

The corrected w3 issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the corrected w3 issue yourself by looking for a resolution described in the article. If it is a complex corrected w3 issue or you are unable to solve the issue, you may contact us by clicking here or by using other corrected w3 support options.

For more information about resolving issues related to corrected w3 in Quickbooks/QBO or to get support for the issue 'When I submitted my W-2’s electronically to SSA, 1 employee’s record was not checked. Is it ok for me to do a second submission to SSA with just the one missing W-2?', click the link below: