QB Issue Resolution:

When you prepare the check

line one is the 1099 mapped account for sub contractor expense, enter the gross amount of pay
line two select the fee expense account and enter the fee amount as a negative amount
the check will net to the amount to be paid

the 1099 reporting will track gross pay

Resolution for Issue 'We are a real estate brokerage office. Our agents are on 1099 as a contractor. We bill the agents office fees' available: Yes (Solved).
Source: Intuit Community forum.

We are a real estate brokerage office. Our agents are on 1099 as a contractor. We bill the agents office fees: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for 1099 mapped
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Error Recovery for 1099 mapped [Canada]
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