QB Issue Resolution:

Answer 1: QB will not do corrected 1096/1099 forms, you will have to do it manually.

 

Answer 2:

 

Thanks for reaching out. I hope you’re enjoying this day so far.

 

To clarify, which payroll service are you using? For example, Intuit Online Payroll Enhanced.  If you’re using Enhanced payroll and you e-filed, then you’re not able to make corrections to the submitted 1099.  However, you can make corrections to a printed copy and send it by mail to the IRS.

 

More more information about correcting 1099s, check out: Can I make corrections to my 1099 after I e-file?

Resolution for Issue 'We used QB Online to file 1099s they have been filed but now we need to make a correction' available: Yes (Solved).
Source: Intuit Community forum.

We used QB Online to file 1099s they have been filed but now we need to make a correction: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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