QB Issue Resolution:

QuickBooks will post a Journal Entry for the reconciliation adjustment once you force to reconcile the transactions.

If you will delete the transaction, it’ll create a discrepancy for the next reconciliation. Your beginning balance for the next statement date will not balanced with what is in your bank. Please make sure to check whether this needs to be deleted or not.

You may check this helpful article about: Bank and Credit Card Reconciliation.

Resolution for Issue 'What happens if I delete a general jounal entry that QB automatically put into “reconciliation discrepancies” and titled “Balance Adjustment”?' available: Yes (Solved).
Source: Intuit Community forum.

What happens if I delete a general jounal entry that QB automatically put into “reconciliation discrepancies” and titled “Balance Adjustment”?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for Balance Adjustment
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Error Recovery for Balance Adjustment [Canada]
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