QB Issue Resolution:

The reconcile window shows all the transactions in the account that are not yet reconciled. If you have the checkbox at the bottom of the reconcile window checked it will also limit it to transactions prior to the statement closing date you entered.

If a transaction is not showing the most likely reasons are:

1. The transaction is already marked reconciled. If it is, it will have a dark checkmark on it in the register. If this is an error and it should not be reconciled, you can click on the checkbox in the register to change it. However you may have already reconciled it in a previous month and in that case your reconciles will be off if you change it.

2. The transaction is past the statement end date. Perhaps you gave it the wrong date when you entered it. You may want to change the date to match the bank. Or you may want to turn off the “hide statements past statement closing date” checkbox at the bottom of the reconcile window temporarily to see it.

3. The transaction is not in the account at all but in another account.

Rarely there might be a problem with the file in which case File->Utilties->Rebuild may fix it. But I suspect it isn’t the problem here.

Resolution for Issue 'Why are some of the checks & debits I’ve entered using Write Check (appearing on that screen in the left hand column) not showing in the Banking Reconcile window?' available: Yes (Solved).
Source: Intuit Community forum.

Why are some of the checks & debits I’ve entered using Write Check (appearing on that screen in the left hand column) not showing in the Banking Reconcile window?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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