QB Issue Resolution:

“Looks like a check for $100 dated June 2013 was deleted in Oct 2014.”

Good find!

Just recreate the missing transaction and clear it as part of this cycle. You will be back on track.

Resolution for Issue 'Why would the cleared balance not equal the ending balance after all items both deposits and debits have been marked?' available: Yes (Solved).
Source: Intuit Community forum.

Why would the cleared balance not equal the ending balance after all items both deposits and debits have been marked?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for Deposits
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Error Recovery for Deposits [Canada]
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