QB Issue Resolution:

printing the check is a convenience, You can hand write checks if you wish.

if the check is entered in QB, and payable to the vendor

AND the expense for the check uses an expense account that is mapped to the 1099 – yes it will be included when QB calculates 1099 reporting

Resolution for Issue 'Will a check amount be included in vendors 1099 even though a check is not printed?' available: Yes (Solved).
Source: Intuit Community forum.

Will a check amount be included in vendors 1099 even though a check is not printed?: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

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