QB Issue Resolution:

QuickBooks is aware of this and investigating about this issue. I don’t have a firm timeline for when this investigation will be closed, but we are diligently looking into it. I’d like to recommend that you sign up for a containment so that we can send you updates.

http://support.quickbooks.intuit.com/support/articles/SLN90100

Resolution for Issue 'Will QB update form 1096? 1099-MISC box on form 1096 has changed.' available: Yes (Solved).
Source: Intuit Community forum.

Will QB update form 1096? 1099-MISC box on form 1096 has changed.: this issue or error code is a known issue in Quickbooks Online (QBO) and/or Quickbooks. Support for this issue is available either by self-service or paid support options. Experts are available to resolve your Quickbooks issue to ensure minimal downtime and continue running your business. First try to resolve the issue yourself by looking for a resolution described below. If it is a complex issue or you are unable to solve the issue, you may contact us by clicking here or by using other support options.

Support for 1099MISC box
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Error Recovery for 1099MISC box [Canada]
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